Publications and Projects
Publications
I’ve been fortunate to have worked on several international and interesting research projects in the field of cancer genomics. Keep an eye on the space below to see the list of publications my work has contributed to (hopefully!) grow…
# Accepted manuscript, pending publication
* IF taken from Web of Science on the data relative to the publication unless otherwise stated year
Consortia publications
Consortia work can lead us to important conclusions. Along my career, I have been part of the PCAWG consortium that has published the following articles in which the consortium is author:
- Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples Bailey et al. (2020) Nature communications Comments: lists my name
- Sex differences in oncogenic mutational processes Constance et al. (2020) Nature communications Comments: lists my name
- Patterns of somatic structural variation in human cancer genomes Li et al. (2020) Nature
- The repertoire of mutational signatures in human cancer Alexandrov et al. (2020) Nature
- The evolutionary history of 2,658 cancers Gerstung et al. (2020) Nature
- Genomic basis for RNA alterations in cancer Calabrese et al. (2020) Nature
- Analyses of non-coding somatic drivers in 2,658 cancer whole genomes Rheinbay et al. (2020) Nature
- Comprehensive molecular characterization of mitochondrial genomes in human cancers Yuan et al. (2020) Nature genetics
- Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer Akdemir et al. (2020) Nature genetics
- The landscape of viral associations in human cancers Zapatka et al. (2020) Nature genetics
- Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing Cortés et al. (2020) Nature genetics
- Butler enables rapid cloud-based analysis of thousands of human genomes Yakneen et al. (2020) Nature biotechnology
- Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis Carlevaro et al. (2020) Communications Biology
- Integrative pathway enrichment analysis of multivariate omics data Paczkowska et al. (2020) Nature communications
- Pathway and network analysis of more than 2500 whole cancer genomes Reyna et al. (2020) Nature communications
- A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns Jiao et al. (2020) Nature communications
- High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations Zhang et al. (2020) Nature communications
- Genomic footprints of activated telomere maintenance mechanisms in cancer Sieverling et al. (2020) Nature communications
- Combined burden and functional impact tests for cancer driver discovery using DriverPower Shuai et al. (2020) Nature communications
- Inferring structural variant cancer cell fraction Cmero et al. (2020) Nature communications
- Divergent mutational processes distinguish hypoxic and normoxic tumours Bhandari et al. (2020) Nature communications
- Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig Rubanova et al. (2020) Nature communications
Peer-review
My scientific expertise has lead me to several invitations to take part in the peer-review system that ensures the rigorous standards of the scientific process. In particular, I have reviewed articles for the following journals:
- 1 Science. IF(2021)=63.8
- 1 Science Advances. IF(2021)=14.9
- 1 Proceedings of the Royal Society B - Biological Sciences. IF(2021)=5.5
All stated reviews have been certified by Publons / Web of Science: D-7235-2018.
Research projects
100,000 Genomes Project: 25,000 WGS cancer samples through Genomics England.
SCUBA CANCERS: Finding the genetic causes of contagious metastases.
Pan-Cancer Analysis of Whole Genomes: Analysis of 2,658 WGS of 38 cancers.
